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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56980850_56982449_R

Intron Information:

Intron Rank:
143475
Intron Class:
major
Intron Phase:
Intron Coordinates:
56980850 - 56982449
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ACTTCTGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85
0.79
0.8
84.9
29.9
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
48.2
-0
2.2
69.31
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024516
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047831
56980425 - 56982776
2352
ENSAPLT00000025664
56978624 - 56986805
8182