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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56982591_56986534_R

Intron Information:

Intron Rank:
143476
Intron Class:
major
Intron Phase:
Intron Coordinates:
56982591 - 56986534
Intron Length:
3944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
GATGTTTGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
85.6
0.8
0.7
84.6
30.4
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
46.4
-0.2
1.7
62.06
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024516
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025664
56978624 - 56986805
8182