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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5784961_5785961_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5784961 - 5785961

Intron Length:

1001

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTCTGC

5'SS Class:

weak_major

3'SS Sequence:

TTTTCTTTCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATTATTT

Flanking Amino Acid:

VHRTEAIERARLHIGKGVQL

Intron Amino Acid Position:

379

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

58.6

41.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.65

33.2

Minor 5ss

51.3

0.05

2.4

68.4

42.5

Minor BPS

62.5

0.47

1.8

84.55

36.3

Associated Gene:

Gene:

SMAD4

Ensembl Gene ID:

ENSAPLG00000003924

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004047

5783221 - 5803822

20602

ENSAPLT00000024917

5783221 - 5803822

20602