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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5788341_5800638_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5788341 - 5800638

Intron Length:

12298

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGATCA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTCTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TTTTTCTTTTCT

Flanking Amino Acid:

NFPNIPVASTNSTTTWTGSR

Intron Amino Acid Position:

224

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

74.2

30.2

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

0.83

0.6

81.2

30.9

Minor 5ss

39.9

-1.1

49.1

Minor BPS

47.9

-0

3.6

87.49

38.1

Associated Gene:

Gene:

SMAD4

Ensembl Gene ID:

ENSAPLG00000003924

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024917

5783221 - 5803822

20602