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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_57930713_57934064_R

Intron Information:

Intron Rank:
142115
Intron Class:
major
Intron Phase:
Intron Coordinates:
57930713 - 57934064
Intron Length:
3352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.3
67.4
44
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
89
0.88
0.8
87.5
30
Minor 5ss
40.6
-1
3
58.3
39.3
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023810
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019318
57927640 - 57934264
6625