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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5798941_5800638_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5798941 - 5800638

Intron Length:

1698

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGATCA

5'SS Class:

strong_major

3'SS Sequence:

GTTCTTTTACCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGTTGAC

U12 Branch Point Sequence:

TGTTCTTTTACC

Flanking Amino Acid:

NFPNIPVASTSQPPSILTGS

Intron Amino Acid Position:

224

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

74.2

30.2

Major BPS

0.22

1.2

52.4

43.3

Major PPT

0.68

0.9

73.9

40.4

Minor 5ss

39.9

-1.1

49.1

Minor BPS

71.4

0.66

1.6

79.48

35.6

Associated Gene:

Gene:

SMAD4

Ensembl Gene ID:

ENSAPLG00000003924

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004047

5783221 - 5803822

20602