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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5800855_5802028_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5800855 - 5802028

Intron Length:

1174

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTTTCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

GCATGTTTAAAT

Flanking Amino Acid:

DLSGLTLQSSAPSSMLVKDE

Intron Amino Acid Position:

152

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

74.5

41.9

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

86.6

0.82

0.7

82.5

26.2

Minor 5ss

41.2

-1

2.9

54.6

44.5

Minor BPS

51.5

0.13

1.9

66.54

Associated Gene:

Gene:

SMAD4

Ensembl Gene ID:

ENSAPLG00000003924

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024917

5783221 - 5803822

20602

ENSAPLT00000004047

5783221 - 5803822

20602