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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5802059_5802483_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5802059 - 5802483

Intron Length:

425

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

CTATTTTTTAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

TATTTTTTAAAG

Flanking Amino Acid:

HYERVVSPGIDLSGLTLQSS

Intron Amino Acid Position:

142

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

76.5

39.2

Major BPS

73.8

0.59

1.3

72.8

Major PPT

76.8

0.6

78.1

33.9

Minor 5ss

36.6

-1.5

2.7

46.7

41.7

Minor BPS

67.6

0.41

1.4

69.32

37.9

Associated Gene:

Gene:

SMAD4

Ensembl Gene ID:

ENSAPLG00000003924

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024917

5783221 - 5803822

20602

ENSAPLT00000004047

5783221 - 5803822

20602