About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5810416_5810991_R


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
5810416 - 5810991

Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TCG|GTAACTTCC

5'SS Class:
major

3'SS Sequence:
CTCTCTTTGCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
AAATGAT

U12 Branch Point Sequence:
TCGTCCTAAATG

Flanking Amino Acid:
KLNVEKLKDLGVQPGPAYGK

Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73
0.54
1.2
67.1
39.5

Major BPS
68
0.45
1
57.8
39

Major PPT
77.4
0.62
0.9
72.1
37.9

Minor 5ss
47.5
-0.2
2.5
63.4
41

Minor BPS
60.7
0.2
1.8
62.53
46

Associated Gene:

Gene:
ELAC1

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

5809931 - 5812484
2554