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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5811457_5812310_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5811457 - 5812310
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGATCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTCCTGATCC
Flanking Amino Acid:
TQLMKSHLKAGRITKIFITH
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
66.7
0.38
0.9
58.3
37.5
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
63.9
0.41
1.8
75.38
41

Associated Gene:

Gene:
ELAC1
Ensembl Gene ID:
ENSAPLG00000007218
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007484
5809931 - 5812484
2554