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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5816471_5816639_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5816471 - 5816639
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACAAAG
U12 Branch Point Sequence:
TTTTTTTTGCCT
Flanking Amino Acid:
REVSIYIAVKVMEFLYANNM
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
43.4
-0.4
1.4
48.6
33.2
Major PPT
82
0.72
0.8
76.9
31.7
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
ME2
Ensembl Gene ID:
ENSAPLG00000004164
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004303
5815751 - 5829093
13343