Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5817271_5817503_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5817271 - 5817503

Intron Length:

233

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTAACC

5'SS Class:

major

3'SS Sequence:

CGTTTTGTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTAAT

U12 Branch Point Sequence:

TGGCCCCTAATC

Flanking Amino Acid:

GQGNNAYIFPGVALAVILSS

Intron Amino Acid Position:

635

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

67.1

36.3

Major BPS

69.6

0.49

1.1

69.5

Major PPT

77.7

0.62

0.9

72.9

37.4

Minor 5ss

40.9

-1

2.7

53.6

43.2

Minor BPS

56.9

0.2

1.7

65.64

39.7

Associated Gene:

Gene:

ME2

Ensembl Gene ID:

ENSAPLG00000004164

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004303

5815751 - 5829093

13343