Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5818660_5818751_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5818660 - 5818751

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGCTG

5'SS Class:

major

3'SS Sequence:

CGTTTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTAAAAT

U12 Branch Point Sequence:

ACGGCTAAAATC

Flanking Amino Acid:

MFDKYGLLVQGREQKVDSNQ

Intron Amino Acid Position:

515

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

1.1

64.3

47.1

Major BPS

58.2

0.21

1.2

65.3

36.8

Major PPT

80.3

0.68

0.8

73.8

31.3

Minor 5ss

-1.9

3.6

46.2

49.1

Minor BPS

41.4

-0.6

1.8

44.39

38.6

Associated Gene:

Gene:

ME2

Ensembl Gene ID:

ENSAPLG00000004164

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004303

5815751 - 5829093

13343