Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5818866_5819504_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5818866 - 5819504

Intron Length:

639

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGATCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTATCCCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

GATCCTTTAACA

Flanking Amino Acid:

QKVLFLGAGEAALGIANLIV

Intron Amino Acid Position:

477

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

80.3

27.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

70.4

0.46

68.8

37.2

Minor 5ss

35.1

-1.7

3.1

48.3

47.4

Minor BPS

73.6

0.74

1.2

75.19

35.4

Associated Gene:

Gene:

ME2

Ensembl Gene ID:

ENSAPLG00000004164

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004303

5815751 - 5829093

13343