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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5819819_5820108_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5819819 - 5820108
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACCC
5'SS Class:
strong_major
3'SS Sequence:
CCGTGTGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
GTGAGCTTAATG
Flanking Amino Acid:
IDEFMEAITDRYGQNTLIQF
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
65.2
39.1
Major BPS
76.8
0.67
1
66
40.9
Major PPT
64.1
0.32
1
57.6
38.6
Minor 5ss
39.3
-1.2
3
51.9
44.8
Minor BPS
51.8
-0
1.9
56.66
45

Associated Gene:

Gene:
ME2
Ensembl Gene ID:
ENSAPLG00000004164
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004303
5815751 - 5829093
13343