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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_58389036_58404785_R

Intron Information:

Intron Rank:
136788
Intron Class:
major
Intron Phase:
Intron Coordinates:
58389036 - 58404785
Intron Length:
15750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.3
0.93
0.7
84.8
35.6
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
52.2
0.15
1.5
67.55
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021085
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048169
58388837 - 58444349
55513