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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_58517826_58554653_R

Intron Information:

Intron Rank:
155038
Intron Class:
major
Intron Phase:
Intron Coordinates:
58517826 - 58554653
Intron Length:
36828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGTA
5'SS Class:
major
3'SS Sequence:
TCACATTTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTAACTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
70.9
34.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.7
0.44
1
62.4
42.7
Minor 5ss
33.7
-1.9
3.4
49.9
46.4
Minor BPS
60.1
0.4
1.9
80.49
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030903
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017999
58517561 - 58554878
37318