About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5855611_5855742_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5855611 - 5855742
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGAAAG
5'SS Class:
major
3'SS Sequence:
TTGTCTTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTTAGATCAAAG
Flanking Amino Acid:
SAVMDYLQENLHCCGVKNYS
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
71.6
40.1
Major BPS
79.2
0.72
1
75
40
Major PPT
79
0.65
1
76.8
37.3
Minor 5ss
34.2
-1.8
2.9
39.8
39.1
Minor BPS
42.7
-0.6
2.2
55.36
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004971
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005140
5854172 - 5859020
4849