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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_58666221_58675626_R

Intron Information:

Intron Rank:
135969
Intron Class:
major
Intron Phase:
Intron Coordinates:
58666221 - 58675626
Intron Length:
9406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTGCCAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.1
0.72
0.9
76.9
37
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
49.7
0.06
2
73.42
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020582
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021068
58665566 - 58676100
10535