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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5867823_5869562_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5867823 - 5869562
Intron Length:
1740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTTCC
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
GATTTTGCAAGC
Flanking Amino Acid:
RLKEEEARLLEEQQQLLKLE
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
70.4
34.3
Major BPS
68
0.45
1
57.8
39
Major PPT
88.1
0.86
0.6
84.7
22.9
Minor 5ss
41.7
-0.9
2.7
51
39.7
Minor BPS
41
-0.7
2.2
51.6
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005297
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005482
5863723 - 5872649
8927