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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5869782_5870630_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5869782 - 5870630
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTTCACTCAGAT
Flanking Amino Acid:
EDPEEKTRRKQELFKEQQAY
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
34.4
Major BPS
77.7
0.69
1
81
30.2
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
33.6
-1.9
3.7
48.1
42
Minor BPS
47.4
-0.1
2
72.91
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005297
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005482
5863723 - 5872649
8927