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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_58698345_58698754_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58698345 - 58698754
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTATCTCTATTT
Flanking Amino Acid:
LKLKVFVRPANSCMKTIGVH
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
81.8
0.72
0.9
77
36.7
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
54.8
0.23
1.9
77.33
39.5

Associated Gene:

Gene:
EFNA5
Ensembl Gene ID:
ENSAPLG00000006250
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006486
58693188 - 58898748
205561