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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5871128_5872402_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5871128 - 5872402
Intron Length:
1275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
CTGTCATTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TACTTCATAAAT
Flanking Amino Acid:
LKRIEEEKYARKLKEAKEYQ
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
78.7
0.64
0.9
69.6
40.6
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
58.1
0.33
1.7
75.18
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005297
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005482
5863723 - 5872649
8927