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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5885253_5886844_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5885253 - 5886844
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGCTTTGTAACC
Flanking Amino Acid:
LESNHIYTYCGIVLVAINPY
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.3
0.48
1
75.5
32.9
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
53.2
0.08
2
65.82
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005427
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038315
5882428 - 5941475
59048
ENSAPLT00000030573
5880697 - 5941475
60779
ENSAPLT00000005678
5879099 - 5941475
62377