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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5889712_5890169_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5889712 - 5890169
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TCGTGTCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TAACGTTTAATT
Flanking Amino Acid:
KVLASSPIMEAIGNAKTTRN
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
67.5
0.39
1
61.9
39
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
56.4
0.28
1.7
71.35
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005427
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038315
5882428 - 5941475
59048
ENSAPLT00000030573
5880697 - 5941475
60779
ENSAPLT00000005678
5879099 - 5941475
62377