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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5890314_5890878_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5890314 - 5890878
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CCCCTATTAACT
Flanking Amino Acid:
LLEKSRVVFQAEDERNYHIF
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
79.2
0.66
0.7
73.1
25.2
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
53.3
0.18
1.7
65.65
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005427
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038315
5882428 - 5941475
59048
ENSAPLT00000030573
5880697 - 5941475
60779
ENSAPLT00000005678
5879099 - 5941475
62377