Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5901955_5903101_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5901955 - 5903101

Intron Length:

1147

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACCGCT

5'SS Class:

major

3'SS Sequence:

TGTCCTGTGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGCGAC

U12 Branch Point Sequence:

TTTTTTTTCCCT

Flanking Amino Acid:

SFIVLHFADKVEYQCEGFLE

Intron Amino Acid Position:

559

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.2

69.7

41.3

Major BPS

42.5

-0.4

1.4

35.6

42.9

Major PPT

0.32

57.9

43.1

Minor 5ss

44.5

-0.6

3.3

65.7

45.4

Minor BPS

45.4

-0.2

3.6

82.56

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005427

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030573

5880697 - 5941475

60779

ENSAPLT00000005678

5879099 - 5941475

62377