Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5904361_5904646_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5904361 - 5904646

Intron Length:

286

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGTGA

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTAAA

U12 Branch Point Sequence:

TTTTTTTTTCCA

Flanking Amino Acid:

KEHKKTVGHQFRNSLHLLME

Intron Amino Acid Position:

637

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.8

0.7

38.3

Major BPS

72.7

0.57

72.1

31.1

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

35.4

-1.7

3.3

47.1

48.3

Minor BPS

44.4

-0.4

3.6

74.12

37.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005427

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038315

5882428 - 5941475

59048

ENSAPLT00000005678

5879099 - 5941475

62377