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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5904361_5940676_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5904361 - 5940676
Intron Length:
36316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
GGAGGACGCCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGAAAAA
U12 Branch Point Sequence:
TGCAGCTGAAAA
Flanking Amino Acid:
KEHKKTVGHQAICSLCTALT
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
48.5
-0
1.2
53.7
38.6
Major PPT
39.3
-0.6
1.6
24.4
37
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
45.4
-0.3
2
55.31
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005427
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030573
5880697 - 5941475
60779