Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5906866_5912258_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5906866 - 5912258

Intron Length:

5393

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCGTGC

5'SS Class:

major

3'SS Sequence:

CTCTTGCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GACTAAT

U12 Branch Point Sequence:

TCCTGCCTATCT

Flanking Amino Acid:

IRISAAGFPSRWTYHDFFNR

Intron Amino Acid Position:

698

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.5

0.36

1.3

55.9

44.3

Major BPS

0.47

1.2

69.9

35.3

Major PPT

83.2

0.75

0.8

80.3

31.8

Minor 5ss

41.6

-0.9

3.4

59.3

45.4

Minor BPS

46.3

-0.2

2.3

68.01

48.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005427

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038315

5882428 - 5941475

59048

ENSAPLT00000005678

5879099 - 5941475

62377