Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5919455_5921921_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5919455 - 5921921

Intron Length:

2467

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CCTTGTTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAATAAT

U12 Branch Point Sequence:

CGAGCAATAATT

Flanking Amino Acid:

YVKEKDLLRKRISDLEEENA

Intron Amino Acid Position:

1019

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

0.9

72.4

39.2

Major BPS

67.7

0.44

1.1

67.9

34.4

Major PPT

82.1

0.72

0.8

76.4

32.3

Minor 5ss

29.8

-2.3

3.4

39.7

46.3

Minor BPS

45.3

-0.2

1.9

59.75

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005427

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005678

5879099 - 5941475

62377