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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5922019_5922685_F

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5922019 - 5922685
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTATGGC
5'SS Class:
major
3'SS Sequence:
GCACGAAGCACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
ILCQSEGKQKAEENIQMKKE
Intron Amino Acid Position:
993

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.2
57.7
39.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
49.2
-0
1
38.8
37.7
Minor 5ss
34.8
-1.7
3.1
44.6
43.2
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005427
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038315
5882428 - 5941475
59048