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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59257249_59259637_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59257249 - 59259637
Intron Length:
2389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TAAATTTGAATA
Flanking Amino Acid:
KQLDLSSRQQVTDELLEKIA
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
68.1
42.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
83.5
0.75
0.9
77.3
37
Minor 5ss
39
-1.2
2.8
49
46.8
Minor BPS
50.9
0.02
1.4
58.68
34.5

Associated Gene:

Gene:
FBXL17
Ensembl Gene ID:
ENSAPLG00000010940
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040821
58967903 - 59277010
309108
ENSAPLT00000011387
59060964 - 59277010
216047