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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59368079_59373147_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
59368079 - 59373147
Intron Length:
5069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTACTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTACTTACAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
39.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
84.1
0.77
0.8
77.4
36
Minor 5ss
30.6
-2.2
3.4
39.1
46.7
Minor BPS
57
0.08
2
69.83
43

Associated Gene:

Gene:
FER
Ensembl Gene ID:
ENSAPLG00000010838
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011317
59361360 - 59538902
177543