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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5936966_5938822_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5936966 - 5938822

Intron Length:

1857

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

ATCTTCTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

CTGTTTTCATCT

Flanking Amino Acid:

HCLKQYSGDAGFMTQNTPKQ

Intron Amino Acid Position:

1567

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

68.2

Major BPS

100

1.24

0.5

100

Major PPT

82.6

0.73

0.8

80.8

30.5

Minor 5ss

33.1

-1.9

3.2

43.9

43.7

Minor BPS

48.9

-0

1.8

66.91

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005427

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038315

5882428 - 5941475

59048

ENSAPLT00000005678

5879099 - 5941475

62377