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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59373406_59377634_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59373406 - 59377634
Intron Length:
4229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTGTTCTGATTT
Flanking Amino Acid:
QLDYISNVSKSWLLVVQQTE
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
50.3
0.09
1.7
67.76
43.8

Associated Gene:

Gene:
FER
Ensembl Gene ID:
ENSAPLG00000010838
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011317
59361360 - 59538902
177543