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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5938974_5939763_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5938974 - 5939763

Intron Length:

790

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

CCCCCTTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAA

U12 Branch Point Sequence:

AAACGCTCATCT

Flanking Amino Acid:

VAEGILQPMIVSGVLEYESI

Intron Amino Acid Position:

1617

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

76.2

34.2

Major BPS

75.5

0.63

40.9

Major PPT

81.6

0.71

0.7

26.5

Minor 5ss

41.9

-0.9

2.7

42.2

Minor BPS

43.1

-0.4

2.1

58.78

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005427

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038315

5882428 - 5941475

59048

ENSAPLT00000005678

5879099 - 5941475

62377