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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5946744_5949521_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5946744 - 5949521
Intron Length:
2778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
CCTTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TGATCCTGGATC
Flanking Amino Acid:
MALLRGVFIVAAKRT
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
59.7
46.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
81.4
0.71
0.8
75.8
32.6
Minor 5ss
27.7
-2.6
2.7
24
36.8
Minor BPS
61.5
0.35
1.5
68.16
37.3

Associated Gene:

Gene:
ACAA2
Ensembl Gene ID:
ENSAPLG00000006058
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006290
5946728 - 5957428
10701