About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59476068_59478865_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59476068 - 59478865
Intron Length:
2798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTTAGAATT
Flanking Amino Acid:
DVTLGELLGKGNFGEVYKGT
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.3
0.77
0.8
81.7
34.6
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
52.5
0.16
1.7
74.16
36.7

Associated Gene:

Gene:
FER
Ensembl Gene ID:
ENSAPLG00000010838
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011317
59361360 - 59538902
177543