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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5953524_5954367_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5953524 - 5954367
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TCCTTACTGCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TCTCCCTTAAAA
Flanking Amino Acid:
DGTVTAGNASGVCDGAGAVI
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1
65.5
40.2
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
60.7
0.24
1.1
60.4
39.8
Minor 5ss
32.8
-2
2.7
40.5
39
Minor BPS
74.1
0.75
1.4
78.42
37.7

Associated Gene:

Gene:
ACAA2
Ensembl Gene ID:
ENSAPLG00000006058
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006290
5946728 - 5957428
10701