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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_5956393_5957343_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5956393 - 5957343
Intron Length:
951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTCATTTTCACC
Flanking Amino Acid:
RITAHLVHELRRRGGKYAVG
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
72.4
39.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.4
0.82
0.7
78.3
35.6
Minor 5ss
29.8
-2.3
3.4
39.7
46.3
Minor BPS
48.9
-0.1
1.8
58.71
40.7

Associated Gene:

Gene:
ACAA2
Ensembl Gene ID:
ENSAPLG00000006058
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006290
5946728 - 5957428
10701