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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59606865_59607879_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59606865 - 59607879
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCATGTTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGCTTCCTAACT
Flanking Amino Acid:
SVSEDLDVEWRLLDEFNEGL
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
78.8
0.65
0.9
72.4
37.6
Minor 5ss
40
-1.1
2.7
50.1
46.4
Minor BPS
65.8
0.57
1.7
81.08
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011350
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011803
59597552 - 59613867
16316