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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59608060_59609578_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59608060 - 59609578
Intron Length:
1519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ACACTTTTATTT
Flanking Amino Acid:
EVYIGSGLGGRELPPLEEVE
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.7
0.56
1.1
75.5
38.2
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
48.5
-0
1.5
59.64
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011350
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011803
59597552 - 59613867
16316