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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59609738_59612740_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59609738 - 59612740
Intron Length:
3003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTATATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GTTAAATTAACA
Flanking Amino Acid:
HLPQPLKDEDSSECSDGEWS
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.4
33.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
80.7
0.69
0.9
74.3
39.8
Minor 5ss
36.4
-1.5
3.4
49.2
47.3
Minor BPS
57.6
0.23
1.8
71.91
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011350
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011803
59597552 - 59613867
16316