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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59642298_59648816_F

Intron Information:

Intron Rank:
150278
Intron Class:
major
Intron Phase:
Intron Coordinates:
59642298 - 59648816
Intron Length:
6519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
TTTCCTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
CTGTTATCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
79
0.72
1
80.3
31.7
Major PPT
84.6
0.78
0.6
84.6
23.1
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
53.7
0.2
1.9
72.84
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030769
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021924
59642173 - 59650493
8321