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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59649385_59650323_F

Intron Information:

Intron Rank:
150279
Intron Class:
major
Intron Phase:
Intron Coordinates:
59649385 - 59650323
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCAGAGG
5'SS Class:
major
3'SS Sequence:
TTTTTGTCCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TTTTTGTCCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.1
53.9
44.7
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
80.9
0.69
0.8
76.8
32
Minor 5ss
24.5
-2.9
3.1
30.7
42.8
Minor BPS
44.6
-0.4
2.5
66.51
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030769
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030817
59648628 - 59650493
1866
ENSAPLT00000021924
59642173 - 59650493
8321