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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59650842_59682205_F

Intron Information:

Intron Rank:
150283
Intron Class:
major
Intron Phase:
Intron Coordinates:
59650842 - 59682205
Intron Length:
31364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCAAAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TCTCCTTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
67.1
0.39
1
58.2
40.7
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
65
0.55
1.4
78.06
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030769
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031109
59650324 - 59686158
35835