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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59684954_59689125_R

Intron Information:

Intron Rank:
150519
Intron Class:
major
Intron Phase:
Intron Coordinates:
59684954 - 59689125
Intron Length:
4172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCGTGGA
5'SS Class:
major
3'SS Sequence:
GGTCTGATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGGTCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.2
64.7
41.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.3
0.48
1
66.3
44
Minor 5ss
27.3
-2.6
3
33.1
41.8
Minor BPS
48.6
-0
1.8
67.76
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028460
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024516
59658723 - 59694631
35909