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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59764672_59766649_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59764672 - 59766649
Intron Length:
1978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTAGA
5'SS Class:
major
3'SS Sequence:
ACCTTGTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCTTTTAAACT
Flanking Amino Acid:
EGHQWLERNLGVKPKSGWAV
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.6
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.4
0.39
1
61.8
38.2
Minor 5ss
40.7
-1
2.5
42.3
44.5
Minor BPS
60.5
0.41
1.7
74.22
43.6

Associated Gene:

Gene:
MAN2A1
Ensembl Gene ID:
ENSAPLG00000011352
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011917
59732446 - 59862554
130109