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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_59766824_59770716_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59766824 - 59770716
Intron Length:
3893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTCTTTTTAATT
Flanking Amino Acid:
TLEFLWRQNWDLGSSTDILC
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.9
0.83
0.8
78.9
38.5
Minor 5ss
47.3
-0.3
2.5
60.3
44.3
Minor BPS
71
0.74
1.2
78.3
39.3

Associated Gene:

Gene:
MAN2A1
Ensembl Gene ID:
ENSAPLG00000011352
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011917
59732446 - 59862554
130109